Analyse bioinformatique des séquences
BLAST Fichier résultat (1) BLASTN 1.4.7 [16-Oct-94] [Build 17:42:06 Mar 10 1995] Reference: Altschul, Stephen F., Warren Gish, Webb Miller, Eugene W. Myers, and David J. Lipman (1990). Basic local alignment search tool. J. Mol. Biol. 215:403-10. Notice: this program and its default parameter settings are optimized to find nearly identical sequences rapidly. To identify weak similarities encoded in nucleic acid, use BLASTX, TBLASTN or TBLASTX. Query= gb|X17217|ADAAVAR Avian adenovirus (CELO) DNA encoding VA (virus-associated) RNA and six open reading frames. (4898 letters) Database: smallgenbank.fasta 100 sequences; 205,192 total letters. Searching.................................................done Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N gb AAUNKDNA 3576 Z17216 Avian adenovirus DNA (CEL06). ... 302 6.4e-17 1 gb AAVSPHERE 8457 M77182 Amsacta entomopoxvirus sphero... 112 0.0052 4 gb AAVSPHER 4657 M75889 Amsacta moorei entomopoxvirus ... 94 0.34 3 gb AAFVMAF 3171 M26769 Avian musculoaponeurotic fibros... 92 0.96 2 gb ACU10885 2773 U10885 AcMNPV HR3 p6.9 gene, partial ... 101 0.97 1 gb ACSJUN 1074 M16266 Avian sarcoma virus 17 proviral ... 98 0.998 1 gb AAVTHYKIN 1511 M80924 Amsacta entomopoxvirus thymid... 98 0.998 1 gb AAPARV 4176 X74945 Aedes albopictus Parvovirus DNA.... 92 0.998 2 gb AD12PROT 809 X07655 Human adenovirus type 12 endopr... 97 0.9992 1 gb ACU04879 3320 U04879 Autographa californica nuclear... 91 0.9994 2 gb ACU09501 1572 U09501 Autographa californica nuclear... 96 0.9999 1 gb A15H9HEX 1528 X76707 Adenovirus type 15H9 (Morrison... 88 0.99992 2 BLAST Fichier résultat (2) >gb AAUNKDNA 3576 Z17216 Avian adenovirus DNA (CEL06). Length = 3576 Minus Strand HSPs: Score = 302 (83.4 bits), Expect = 6.4e-17, P = 6.4e-17 Identities = 62/64 (96%), Positives = 62/64 (96%), Strand = Minus / Plus Query: 64 AGCGACACGCTGCGGTTATGGCCGGTTATGACTGCGTTAGTTTTTGAGGTTATTATACAT 5 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3513 AGCGACACCGTGCGGTTATGGCCGGTTATGACTGCGTTAGTTTTTGAGGTTATTATACAT 3572 Query: 4 CATC 1 |||| Sbjct: 3573 CATC 3576 BLAST Fichier résultat (3) >gb AAVSPHERE 8457 M77182 Amsacta entomopoxvirus spheroidin gene, co Length = 8457 Minus Strand HSPs: Score = 112 (30.9 bits), Expect = 0.0052, Sum P(4) = 0.0052 Identities = 48/80 (60%), Positives = 48/80 (60%), Strand = Minus / Plus Query: 1507 TCAAAGTGATTGTTCAAGGTATGTCATTATATACATATTTACAATATGCATTAATATCAC 1448 | ||| | || | || || | ||| || || ||||| | | | || | || | Sbjct: 307 TAAAACTCATAGAATAATATAATTTTTTAAATTCAAATTTAGATTTTATGTTGAAATAAA 366 Query: 1447 CTATCTAATAGAGCATTAAT 1428 |||| ||||| | | || | Sbjct: 367 CTATATAATATAAAAATATT 386 Score = 98 (27.1 bits), Expect = 0.0052, Sum P(4) = 0.0052 Identities = 58/106 (54%), Positives = 58/106 (54%), Strand = Minus / Plus Query: 175 AGATTCGTATTCGTATTGGTTAGAAAACAAATAAATCAATAAACTAATTTATGATATCAT 116 | ||| | ||| || | || ||| || ||| ||| | |||| | || Sbjct: 7317 ATATTAATCTTCTCATAGTTTTTAAACCACCTAATTCAGTTTTATAATCATATTTTTCTG 7376 Query: 115 TCATATTTATGGGTGTGGTTTTATTATGCGTCATAAAACTATTTTG 70 |||||| | | | || | || | ||||| |||| || Sbjct: 7377 CCATATTATATAATTTAGATTGCTCATCTGACATAATTATATTATG 7422 Score = 94 (26.0 bits), Expect = 0.46, Sum P(3) = 0.37 Identities = 26/35 (74%), Positives = 26/35 (74%), Strand = Minus / Plus Query: 4082 AAAAAAATAGAAAAATGAACTAACCGACAATAAGA 4048 |||| |||| ||||| | | || ||| |||| || Sbjct: 3104 AAAACAATAAGAAAATTATCAAATCGAAAATATGA 3138 Score = 93 (25.7 bits), Expect = 0.011, Sum P(4) = 0.011 Identities = 37/60 (61%), Positives = 37/60 (61%), Strand = Minus / Plus Query: 156 TTAGAAAACAAATAAATCAATAAACTAATTTATGATATCATTCATATTTATGGGTGTGGT 97 ||| || | | |||||| |||| | |||| | | | | ||| || | |||| | Sbjct: 6120 TTACAAGTTATAAAAATCATTAAAATGATTTTTTAAAATGATATTATCGATAGTTGTGAT 6179 BLAST Fichier résultat (4) Parameters: W=4 V=500 B=250 -ctxfactor=2.00 E=10 Query ----- As Used ----- ----- Computed ---- Strand MatID Matrix name Lambda K H Lambda K H +1 0 +5,-4 0.192 0.226 0.357 same same same -1 0 +5,-4 0.192 0.226 0.357 same same same Query Strand MatID Length Eff.Length E S W T X E2 S2 +1 0 4898 4898 10. 92 4 21 73 0.021 84 -1 0 4898 4898 10. 92 4 21 73 0.021 84 Statistics: Query Expected Observed HSPs HSPs Strand MatID High Score High Score Reportable Reported +1 0 100 (27.6 bits) 98 (27.1 bits) 6 6 -1 0 100 (27.6 bits) 302 (83.4 bits) 23 23 Query Neighborhd Word Excluded Failed Successful Overlaps Strand MatID Words Hits Hits Extensions Extensions Excluded +1 0 4895 3999877 1124998 2874845 34 0 -1 0 4895 4163077 1183486 2979551 40 0 Database: smallgenbank.fasta Release date: unknown Posted date: 2:36 PM MET DST Oct 08, 1996 # of letters in database: 205,192 # of sequences in database: 100 # of database sequences satisfying E: 12 No. of states in DFA: 85 (6 KB) Total size of DFA: 84 KB (128 KB) Time to generate neighborhood: 0.06u 0.00s 0.06t Real: 00:00:00 Time to search database: 57.02u 0.05s 57.07t Real: 00:00:58 Total cpu time: 57.19u 0.39s 57.58t Real: 00:00:58 |
